moved core markdown documentation to live within to repo, this will eventually be the docs hosted on github and allow them to be versioned with the code

Makefile.am

@@ -1,14 +1,9 @@
 # CORE
-# (c)2010-2012 the Boeing Company.
-# See the LICENSE file included in this distribution.
-#
-# author: Jeff Ahrenholz  <jeffrey.m.ahrenholz@boeing.com>
-#
 # Top-level Makefile for CORE project.
 #
 
 if WANT_DOCS
-  DOCS = doc
+  DOCS = docs man
 endif
 
 if WANT_GUI
@@ -171,26 +166,15 @@ change-files:
 	$(call change-files,scripts/core-daemon)
 	$(call change-files,daemon/core/constants.py)
 
-CORE_DOC_HTML = core-html-$(PACKAGE_VERSION)
-CORE_DOC_PDF = core-manual-$(PACKAGE_VERSION)
 CORE_DOC_SRC = core-python-$(PACKAGE_VERSION)
 .PHONY: doc
 doc: doc-clean
-	$(MAKE) -C doc html
-	mv doc/_build/html doc/$(CORE_DOC_HTML)
-	tar -C doc -czf $(CORE_DOC_HTML).tgz $(CORE_DOC_HTML)
-	$(MAKE) -C doc latexpdf
-	mv doc/_build/latex/CORE.pdf $(CORE_DOC_PDF).pdf
 	$(MAKE) -C daemon/doc html
 	mv daemon/doc/_build/html daemon/doc/$(CORE_DOC_SRC)
 	tar -C daemon/doc -czf $(CORE_DOC_SRC).tgz $(CORE_DOC_SRC)
 
 .PHONY: doc-clean
 doc-clean:
-	-rm -rf doc/_build
-	-rm -rf doc/$(CORE_DOC_HTML)
 	-rm -rf daemon/doc/_build
 	-rm -rf daemon/doc/$(CORE_DOC_SRC)
-	-rm -f $(CORE_DOC_HTML).tgz
 	-rm -f $(CORE_DOC_SRC).tgz
-	-rm -f $(CORE_DOC_PDF).pdf