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FINAL

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Afonso Franco 2024-01-10 02:47:17 +00:00
parent b84aa107de
commit a8b0b317a4
Signed by: afonso
SSH key fingerprint: SHA256:JiuxZNdA5bRWXPMUJChI0AQ75yC+cXY4xM0IaVwEVys
10 changed files with 5638 additions and 70 deletions
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33
Makefile
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@ -1,16 +1,33 @@
CFLAGS = -march=native -mtune=native -O2 -ftree-vectorize -mavx
CC = gcc
SRC = src/
CFLAGS = -march=native -mtune=native -mavx -O2 -ftree-vectorize -fopenmp
.DEFAULT_GOAL = MD.exe
.DEFAULT_GOAL = all
MD.exe: $(SRC)/MD2.cpp
$(CC) $(CFLAGS) $(SRC)MD2.cpp -lm -o MD.exe
all: MDseq.exe MDpar.exe
MDseq.exe: $(SRC)/MDseq.cpp
module load gcc/11.2.0;
$(CC) $(CFLAGS) $(SRC)MDseq.cpp -lm -o MDseq.exe
MDpar.exe: $(SRC)/MDpar.cpp
module load gcc/11.2.0;
$(CC) $(CFLAGS) $(SRC)MDpar.cpp -lm -fopenmp -o MDpar.exe
#FASE 3
MDvec.exe: $(SRC)/MDvec.cpp
module load gcc/11.2.0;
$(CC) $(CFLAGS) $(SRC)MDvec.cpp -lm -fopenmp -o MDvec.exe
clean:
rm ./MD.exe
rm ./MD*.exe
runseq:
./MDseq.exe < inputdata.txt
runpar:
OMP_NUM_THREADS=24 ./MDpar.exe < inputdata.txt
run:
./MD.exe < inputdata.txt
runfull: clean MD run
sbatch run.sh